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notepad.pw
OneNote
Simplenote
Evernote
Laverna
RedNotebook
Notezilla
Chrysanth Diary
Qiqqa
Mendeley
Zotero
JabRef
Citavi
Docear
Paperpile
BibDesk
notepad.pwQiqqa is by far the strongest solution for research and managing pdf's. Zotero, named as a comparison is weak as it does not allow pdf;s to be loaded into its interface - you need to use a pdf reader, which defeats its whole purpose. With Qiqqa documents in a library can be searched together. It has excellent maps of your libraries. It is not prefect, having a few glitches, but still is the only one of its kind.
OneNote - Get the OneNote app for free on your tablet, phone, and computer, so you can capture your ideas and to-do lists in one place wherever you are. Or try OneNote with Office for free.
Mendeley - Easily organize your papers, read & annotate your PDFs, collaborate in private or open groups, and securely access your research from everywhere.
Simplenote - The simplest way to keep notes. Light, clean, and free. Simplenote is now available for iOS, Android, Mac, and the web.
Zotero - Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share research.
Evernote - Bring your life's work together in one digital workspace. Evernote is the place to collect inspirational ideas, write meaningful words, and move your important projects forward.
JabRef - Graphical Java application for managing bibtex (. bib) databases.JabRef · JabRef Help · JabRef | Blog · OpenOffice/LibreOffice .